track coverage-arabidopsis_culture-all
longLabel arabidopsis_culture-all coverage
shortLabel arabidopsis_culture-all coverage
container multiWig
aggregate stacked
showSubtrackColorOnUi on
type bigWig 0 1000
autoScale off
alwaysZero on
viewLimits 0:276
visibility full
maxHeightPixels 100:100:8
    
    track Accessible-arabidopsis_culture-all
    parent coverage-arabidopsis_culture-all
    bigDataUrl bw/all.fire.coverage.bw
    type bigWig
    color 139,0,0
    
    track Linker-arabidopsis_culture-all
    parent coverage-arabidopsis_culture-all
    bigDataUrl bw/all.linker.coverage.bw
    type bigWig
    color 147,112,219
    
    track Nucleosomes-arabidopsis_culture-all
    parent coverage-arabidopsis_culture-all
    bigDataUrl bw/all.nucleosome.coverage.bw
    type bigWig
    color 169,169,169
    
track FIRE.peaks.arabidopsis_culture
type bigNarrowPeak
bigDataUrl bb/FDR-FIRE-peaks.bb
shortLabel FIRE.peaks.arabidopsis_culture
longLabel FIRE.peaks.arabidopsis_culture
visibility dense
maxHeightPixels 50:50:1

track hap.diff.arabidopsis_culture
type bigBed 9 +
itemRgb on
bigDataUrl bb/hap_differences.bb
shortLabel hap.diffarabidopsis_culture
longLabel hap.diff.arabidopsis_culture
visibility pack
maxHeightPixels 25:25:1

track FDR-wide-peaks-arabidopsis_culture
shortLabel FDR-wide-peaks-arabidopsis_culture
longLabel FDR-wide-peaks-arabidopsis_culture
type bigBed 
bigDataUrl bb/FDR-wide-peaks.bb
visibility dense
maxItems 100000

track percent-accessible-arabidopsis_culture
shortLabel arabidopsis_culture percent-accessible tracks 
longLabel  arabidopsis_culture percent-accessible tracks
container multiWig
aggregate none 
showSubtrackColorOnUi on
type bigWig 0 1000
alwaysZero on
viewLimits 0:100
autoScale off
maxItems 100000
visibility full
maxHeightPixels 100:100:8

    track percent-accessible-arabidopsis_culture-all
    parent percent-accessible-arabidopsis_culture
    bigDataUrl bw/all.percent.accessible.bw
    type bigWig
    visibility hide
    color 0,0,0

track arabidopsis_culture-H1-fibers
shortLabel arabidopsis_culture-H1-fibers
longLabel arabidopsis_culture-H1-fibers
visibility squish
type bigBed 12 +
itemRgb On
filterText.keywords H1
bigDataUrl bb/fire-fibers.bb 
decorator.default.bigDataUrl bb/fire-fiber-decorators.bb 
decorator.default.filterValues.keywords FIRE,Linker

track arabidopsis_culture-H2-fibers
shortLabel arabidopsis_culture-H2-fibers
longLabel arabidopsis_culture-H2-fibers
visibility squish
type bigBed 12 +
itemRgb On
filterText.keywords H2
bigDataUrl bb/fire-fibers.bb 
decorator.default.bigDataUrl bb/fire-fiber-decorators.bb 
decorator.default.filterValues.keywords FIRE,Linker

track arabidopsis_culture-UNK-fibers
shortLabel arabidopsis_culture-UNK-fibers
longLabel arabidopsis_culture-UNK-fibers
visibility squish
type bigBed 12 +
itemRgb On
filterText.keywords UNK
bigDataUrl bb/fire-fibers.bb 
decorator.default.bigDataUrl bb/fire-fiber-decorators.bb 
decorator.default.filterValues.keywords FIRE,Linker

track coverage-arabidopsis_culture-hap1
longLabel arabidopsis_culture-hap1 coverage
shortLabel arabidopsis_culture-hap1 coverage
container multiWig
aggregate stacked
showSubtrackColorOnUi on
type bigWig 0 1000
autoScale off
alwaysZero on
viewLimits 0:276
visibility full
maxHeightPixels 100:100:8
    
    track Accessible-arabidopsis_culture-hap1
    parent coverage-arabidopsis_culture-hap1
    bigDataUrl bw/hap1.fire.coverage.bw
    type bigWig
    color 139,0,0
    
    track Linker-arabidopsis_culture-hap1
    parent coverage-arabidopsis_culture-hap1
    bigDataUrl bw/hap1.linker.coverage.bw
    type bigWig
    color 147,112,219
    
    track Nucleosomes-arabidopsis_culture-hap1
    parent coverage-arabidopsis_culture-hap1
    bigDataUrl bw/hap1.nucleosome.coverage.bw
    type bigWig
    color 169,169,169
    
    track percent-accessible-arabidopsis_culture-hap1
    parent percent-accessible-arabidopsis_culture
    bigDataUrl bw/hap1.percent.accessible.bw
    type bigWig
    visibility full
    color 0,0,255

track coverage-arabidopsis_culture-hap2
longLabel arabidopsis_culture-hap2 coverage
shortLabel arabidopsis_culture-hap2 coverage
container multiWig
aggregate stacked
showSubtrackColorOnUi on
type bigWig 0 1000
autoScale off
alwaysZero on
viewLimits 0:276
visibility full
maxHeightPixels 100:100:8
    
    track Accessible-arabidopsis_culture-hap2
    parent coverage-arabidopsis_culture-hap2
    bigDataUrl bw/hap2.fire.coverage.bw
    type bigWig
    color 139,0,0
    
    track Linker-arabidopsis_culture-hap2
    parent coverage-arabidopsis_culture-hap2
    bigDataUrl bw/hap2.linker.coverage.bw
    type bigWig
    color 147,112,219
    
    track Nucleosomes-arabidopsis_culture-hap2
    parent coverage-arabidopsis_culture-hap2
    bigDataUrl bw/hap2.nucleosome.coverage.bw
    type bigWig
    color 169,169,169
    
    track percent-accessible-arabidopsis_culture-hap2
    parent percent-accessible-arabidopsis_culture
    bigDataUrl bw/hap2.percent.accessible.bw
    type bigWig
    visibility full
    color 255,0,0

track FIRE_FDR
compositeTrack on
shortLabel FIRE FDR
longLabel FIRE scores and FDR values
type bigWig
maxItems 100000
maxHeightPixels 100:100:1
alwaysZero on

    track log_fdr
    parent FIRE_FDR
    bigDataUrl bw/log_FDR.bw
    shortLabel -10log10 FDR
    longLabel -10log10 FDR
    autoScale on
    visibility full
    yLineOnOff on
    yLineMark 13.010299956639813
    gridDefault on
    
    track fire_score
    parent FIRE_FDR
    bigDataUrl bw/score.bw
    shortLabel FIRE score
    longLabel FIRE score
    visibility full
    alwaysZero on
    viewLimits 0:100
    viewLimits 0.0:100.0
    windowingFunction maximum