# grouping for fibers 
track YUP8H12-FIRE-fibers
compositeTrack on
shortLabel YUP8H12-FIRE-fibers
longLabel YUP8H12-FIRE-fibers
type bigBed 12 +
maxItems 100000
visibility dense
priority 80
html fire-description.html

# grouping for peaks
track YUP8H12-FIRE-peaks
compositeTrack on
shortLabel YUP8H12-FIRE-peaks
longLabel YUP8H12-FIRE-peaks
type bigBed 12 +
maxItems 100000
visibility dense
priority 30
html fire-description.html

    # track of unreliable regions just above the peak tracks
    track YUP8H12-unreliable-FIRE-coverage-regions
    parent YUP8H12-FIRE-peaks
    shortLabel YUP8H12-unreliable-FIRE-coverage-regions
    longLabel YUP8H12-unreliable-FIRE-coverage-regions
    type bigBed
    bigDataUrl bb/unreliable-coverage-regions.bb
    visibility dense
    priority 29

# grouping for coverage
track YUP8H12-FIRE-coverage
superTrack on show
shortLabel YUP8H12-FIRE-coverage
longLabel YUP8H12-FIRE-coverage
priority 90
html fire-description.html

track YUP8H12-all-FIRE-coverage
parent YUP8H12-FIRE-coverage
longLabel YUP8H12-all-FIRE-coverage
shortLabel YUP8H12-all-FIRE-coverage
container multiWig
aggregate stacked
showSubtrackColorOnUi on
type bigWig 0 1000
autoScale off
alwaysZero on
viewLimits 0:577
visibility full
maxHeightPixels 100:50:8
html fire-description.html
priority 90
    
    track YUP8H12-all-FIRE-accessible
    parent YUP8H12-all-FIRE-coverage
    bigDataUrl bw/all.fire.coverage.bw
    type bigWig
    color 139,0,0
    
    track YUP8H12-all-FIRE-linker
    parent YUP8H12-all-FIRE-coverage
    bigDataUrl bw/all.linker.coverage.bw
    type bigWig
    color 147,112,219
    
    track YUP8H12-all-FIRE-nucleosome
    parent YUP8H12-all-FIRE-coverage
    bigDataUrl bw/all.nucleosome.coverage.bw
    type bigWig
    color 169,169,169
    
    track YUP8H12-narrow-FIRE-peaks
    parent YUP8H12-FIRE-peaks
    type bigNarrowPeak
    bigDataUrl bb/fire-peaks.bb
    shortLabel YUP8H12-FIRE-peaks
    longLabel YUP8H12-FIRE-peaks
    visibility dense
    maxHeightPixels 50:50:1

    track YUP8H12-wide-FIRE-peaks
    parent YUP8H12-FIRE-peaks
    shortLabel YUP8H12-wide-FIRE-peaks
    longLabel YUP8H12-wide-FIRE-peaks
    type bigBed 
    bigDataUrl bb/fire-wide-peaks.bb
    visibility dense
    maxItems 100000
    priority 30

track YUP8H12-FIRE-percent-accessible
shortLabel YUP8H12-FIRE-percent-accessible
longLabel  YUP8H12-FIRE-percent-accessible
graphTypeDefault points
aggregate transparentOverlay
container multiWig
aggregate none 
showSubtrackColorOnUi on
type bigWig 0 1000
alwaysZero on
viewLimits 0:100
autoScale off
maxItems 100000
visibility full
maxHeightPixels 100:50:8
priority 1
yLineOnOff on
yLineMark 100
html fire-description.html
gridDefault on

    track YUP8H12-all-FIRE-percent-accessible
    parent YUP8H12-FIRE-percent-accessible
    shortLabel YUP8H12-all-FIRE-percent-accessible
    longLabel  YUP8H12-all-FIRE-percent-accessible
    bigDataUrl bw/all.percent.accessible.bw
    type bigWig
    visibility hide
    color 0,0,0

    track YUP8H12-H1-FIRE-fibers
    parent YUP8H12-FIRE-fibers
    shortLabel YUP8H12-H1-FIRE-fibers
    longLabel YUP8H12-H1-FIRE-fibers
    visibility dense
    type bigBed 12 +
    itemRgb On
    filterText.keywords H1
    bigDataUrl bb/fire-fibers.bb 
    decorator.default.bigDataUrl bb/fire-fiber-decorators.bb 
    decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE
    decorator.default.filterValuesDefault.keywords LINKER,FIRE

    track YUP8H12-H2-FIRE-fibers
    parent YUP8H12-FIRE-fibers
    shortLabel YUP8H12-H2-FIRE-fibers
    longLabel YUP8H12-H2-FIRE-fibers
    visibility dense
    type bigBed 12 +
    itemRgb On
    filterText.keywords H2
    bigDataUrl bb/fire-fibers.bb 
    decorator.default.bigDataUrl bb/fire-fiber-decorators.bb 
    decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE
    decorator.default.filterValuesDefault.keywords LINKER,FIRE

    track YUP8H12-UNK-FIRE-fibers
    parent YUP8H12-FIRE-fibers
    shortLabel YUP8H12-UNK-FIRE-fibers
    longLabel YUP8H12-UNK-FIRE-fibers
    visibility dense
    type bigBed 12 +
    itemRgb On
    filterText.keywords UNK
    bigDataUrl bb/fire-fibers.bb 
    decorator.default.bigDataUrl bb/fire-fiber-decorators.bb 
    decorator.default.filterValues.keywords 5mC,m6A,NUC,LINKER,FIRE
    decorator.default.filterValuesDefault.keywords LINKER,FIRE

track YUP8H12-FIRE-FDR
compositeTrack on
shortLabel YUP8H12-FIRE-FDR
longLabel YUP8H12-FIRE-FDR
type bigWig 0 1000
maxItems 100000
maxHeightPixels 100:50:1
alwaysZero on
priority 10
html fire-description.html

    track YUP8H12-log-FIRE-FDR
    parent YUP8H12-FIRE-FDR
    bigDataUrl bw/log_FDR.bw
    shortLabel YUP8H12 -10log10 FDR
    longLabel YUP8H12 -10log10 FDR
    autoScale on
    visibility hide
    yLineOnOff on
    yLineMark 13.010299956639813
    gridDefault on